[INFO] cloning repository https://github.com/ntBre/rdkit-rs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ntBre/rdkit-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fdc320774d101f4cc84f964bef9547af88f5d2c9
[INFO] checking ntBre/rdkit-rs against master#82310651b93a594a3fd69015e1562186a080d94c for pr-145770
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ntBre/rdkit-rs
[INFO] finished tweaking git repo https://github.com/ntBre/rdkit-rs
[INFO] tweaked toml for git repo https://github.com/ntBre/rdkit-rs written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ntBre/rdkit-rs on toolchain 82310651b93a594a3fd69015e1562186a080d94c
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ntBre/rdkit-rs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/ntBre/rdkit-sys`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded prettyplease v0.2.16
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 78060b6b04811a139f2fcdb76382e24304365f94f7917d5dba551be8dcad6312
[INFO] running `Command { std: "docker" "start" "-a" "78060b6b04811a139f2fcdb76382e24304365f94f7917d5dba551be8dcad6312", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "78060b6b04811a139f2fcdb76382e24304365f94f7917d5dba551be8dcad6312", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "78060b6b04811a139f2fcdb76382e24304365f94f7917d5dba551be8dcad6312", kill_on_drop: false }`
[INFO] [stdout] 78060b6b04811a139f2fcdb76382e24304365f94f7917d5dba551be8dcad6312
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:7ad1b28ee6f5f7f699f6cf7015098d6ccdd96d6f2d78dd06228f5b4c9faf309c" "/opt/rustwide/cargo-home/bin/cargo" "+82310651b93a594a3fd69015e1562186a080d94c" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9aa68d476c3809e95c43e9b33910364af7e4b455d0744b8fb0f1b1f288e54126
[INFO] running `Command { std: "docker" "start" "-a" "9aa68d476c3809e95c43e9b33910364af7e4b455d0744b8fb0f1b1f288e54126", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.79
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling glob v0.3.1
[INFO] [stderr]    Compiling prettyplease v0.2.16
[INFO] [stderr]    Compiling rustix v0.38.31
[INFO] [stderr]    Compiling libc v0.2.153
[INFO] [stderr]    Compiling linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling bitflags v2.6.0
[INFO] [stderr]    Compiling memchr v2.7.1
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling regex-syntax v0.8.2
[INFO] [stderr]    Compiling either v1.10.0
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling bindgen v0.69.4
[INFO] [stderr]    Compiling home v0.5.9
[INFO] [stderr]    Compiling log v0.4.22
[INFO] [stderr]    Compiling libloading v0.8.3
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling serde v1.0.204
[INFO] [stderr]    Compiling serde_json v1.0.122
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]     Checking itoa v1.0.10
[INFO] [stderr]     Checking ryu v1.0.17
[INFO] [stderr]    Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling clang-sys v1.7.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling quote v1.0.35
[INFO] [stderr]    Compiling syn v2.0.52
[INFO] [stderr]    Compiling regex-automata v0.4.6
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling which v4.4.2
[INFO] [stderr]    Compiling regex v1.10.3
[INFO] [stderr]    Compiling serde_derive v1.0.204
[INFO] [stderr]    Compiling rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea)
[INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-9a38c4ed97fad3fd/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=include/shim.h
[INFO] [stderr]   cargo:rerun-if-changed=include/shim.cpp
[INFO] [stderr]   cargo:rerun-if-changed=include/Makefile
[INFO] [stderr]   cargo:rerun-if-changed=wrapper.h
[INFO] [stderr]   cargo:rerun-if-env-changed=RDROOT
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at /opt/rustwide/cargo-home/git/checkouts/rdkit-sys-f8b7de60bf7e6bc2/dc5d75e/build.rs:15:9:
[INFO] [stderr]   rdkit-sys: RDROOT must be set in the environment
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5ab1c916ff02 - std::backtrace_rs::backtrace::libunwind::trace::h76ea176a64426f0f
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5ab1c916ff02 - std::backtrace_rs::backtrace::trace_unsynchronized::h0830675862e8e766
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5ab1c916ff02 - std::sys::backtrace::_print_fmt::hba1ccef63faaa048
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:66:9
[INFO] [stderr]      3:     0x5ab1c916ff02 - <std::sys::backtrace::BacktraceLock::print::DisplayBacktrace as core::fmt::Display>::fmt::hca516e2c7056a217
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:39:26
[INFO] [stderr]      4:     0x5ab1c9196953 - core::fmt::rt::Argument::fmt::ha510764ac9e77b66
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/fmt/rt.rs:173:76
[INFO] [stderr]      5:     0x5ab1c9196953 - core::fmt::write::h97a802838d45fe7e
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/fmt/mod.rs:1469:25
[INFO] [stderr]      6:     0x5ab1c916cd03 - std::io::default_write_fmt::hb63ad55b2aa53928
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/io/mod.rs:639:11
[INFO] [stderr]      7:     0x5ab1c916cd03 - std::io::Write::write_fmt::h6b2df461464d9a05
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/io/mod.rs:1954:13
[INFO] [stderr]      8:     0x5ab1c916fd52 - std::sys::backtrace::BacktraceLock::print::h81c102a9ac0a1bc7
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:42:9
[INFO] [stderr]      9:     0x5ab1c9171483 - std::panicking::default_hook::{{closure}}::h9934714bf98b056d
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:300:27
[INFO] [stderr]     10:     0x5ab1c9171265 - std::panicking::default_hook::hb31a4fc725ffcf0a
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:327:9
[INFO] [stderr]     11:     0x5ab1c9171e95 - std::panicking::rust_panic_with_hook::h8df5393cb811c708
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:833:13
[INFO] [stderr]     12:     0x5ab1c9171bf6 - std::panicking::begin_panic_handler::{{closure}}::h73dc0a59c2d3b9c7
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:699:13
[INFO] [stderr]     13:     0x5ab1c9170409 - std::sys::backtrace::__rust_end_short_backtrace::h9eb84a109f69f8ca
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/sys/backtrace.rs:174:18
[INFO] [stderr]     14:     0x5ab1c91718bd - __rustc[98c2592f34d7b78b]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:697:5
[INFO] [stderr]     15:     0x5ab1c9194ce0 - core::panicking::panic_fmt::hb0df011123225e8b
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/panicking.rs:75:14
[INFO] [stderr]     16:     0x5ab1c8c1eb94 - build_script_build::main::hb6ef94e838d6c60b
[INFO] [stderr]     17:     0x5ab1c8c1b703 - core::ops::function::FnOnce::call_once::h13fea5614306b617
[INFO] [stderr]     18:     0x5ab1c8c1b396 - std::sys::backtrace::__rust_begin_short_backtrace::hde896c70344d38e6
[INFO] [stderr]     19:     0x5ab1c8c1b379 - std::rt::lang_start::{{closure}}::h5340d5421477811f
[INFO] [stderr]     20:     0x5ab1c9167c00 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h0bcac900efc89129
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/core/src/ops/function.rs:290:21
[INFO] [stderr]     21:     0x5ab1c9167c00 - std::panicking::catch_unwind::do_call::hfadc8e58bd88a07a
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     22:     0x5ab1c9167c00 - std::panicking::catch_unwind::h44c20dc1edb63a1e
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     23:     0x5ab1c9167c00 - std::panic::catch_unwind::hed574ee6107b8e15
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panic.rs:359:14
[INFO] [stderr]     24:     0x5ab1c9167c00 - std::rt::lang_start_internal::{{closure}}::h7f49669407df0483
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/rt.rs:175:24
[INFO] [stderr]     25:     0x5ab1c9167c00 - std::panicking::catch_unwind::do_call::hdc3b107dc7611175
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:589:40
[INFO] [stderr]     26:     0x5ab1c9167c00 - std::panicking::catch_unwind::h50fbac1cdf73dd69
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panicking.rs:552:19
[INFO] [stderr]     27:     0x5ab1c9167c00 - std::panic::catch_unwind::h061b64ee85b76832
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/panic.rs:359:14
[INFO] [stderr]     28:     0x5ab1c9167c00 - std::rt::lang_start_internal::h935ec80c2dc417b9
[INFO] [stderr]                                  at /rustc/82310651b93a594a3fd69015e1562186a080d94c/library/std/src/rt.rs:171:5
[INFO] [stderr]     29:     0x5ab1c8c1b361 - std::rt::lang_start::h2969857b0f5f1f86
[INFO] [stderr]     30:     0x5ab1c8c1ebd5 - main
[INFO] [stderr]     31:     0x79ee7af7c1ca - <unknown>
[INFO] [stderr]     32:     0x79ee7af7c28b - __libc_start_main
[INFO] [stderr]     33:     0x5ab1c8c1a885 - _start
[INFO] [stderr]     34:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "9aa68d476c3809e95c43e9b33910364af7e4b455d0744b8fb0f1b1f288e54126", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9aa68d476c3809e95c43e9b33910364af7e4b455d0744b8fb0f1b1f288e54126", kill_on_drop: false }`
[INFO] [stdout] 9aa68d476c3809e95c43e9b33910364af7e4b455d0744b8fb0f1b1f288e54126
